All EN-TEx raw data can be found on a
on the ENCODE site.
Personal genomes can also be downloaded from a
All the ancillary files including annotations for EN-TEx are listed
Interactive visualization tools
The EN-TEx annotations can be viewed on the genome with the ENCODE SCREEN
(Example for a specific cCRE).
We provide a Chromosome Painter tool to visualize the EN-TEx data on chromosome level (see Demo).
We also provide a Explorer Tool to explore the EN-TEx data (see Demo).
Several GitHub repositories have been created for the source code of the tools and models developed for EN-TEx
transferQTL model. (Another github also has transformer-model code associated with application #3.)
Rozowsky, J., Gao, J., Borsari, B., Yang, Y. T., Galeev, T., Gürsoy, G., ... & Gerstein, M. (2023). The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models. Cell, 186(7), 1493-1511.
Extra files that are related to EN-TEx but not included in the paper.